STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCE95461.1UPF0152 protein SSO1253. (199 aa)    
Predicted Functional Partners:
fadb3
enoyl-CoA hydratase/isomerase family protein.
 
 
 0.680
rkpA
Type I polyketide synthase RkpA.
  
 
 0.558
rplM
50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
  
    0.511
rpsI
30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
       0.501
CCE97684.1
Uncharacterized protein conserved in bacteria.
  
    0.494
CCE94710.1
Two-component sensor histidine kinase protein.
 
 
   0.491
CCE94694.1
acyl-CoA dehydrogenase.
 
  
 0.489
CCE95054.1
acyl-CoA dehydrogenase.
 
  
 0.464
plsX
Fatty acid/phospholipid synthesis protein plsX; Catalyzes the reversible formation of acyl-phosphate (acyl- PO(4)) from acyl-[acyl-carrier-protein] (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA.
  
  
 0.441
CCE96697.1
Uncharacterized protein conserved in bacteria.
  
     0.436
Your Current Organism:
Sinorhizobium fredii HH103
NCBI taxonomy Id: 1117943
Other names: S. fredii HH103, Sinorhizobium fredii str. HH103, Sinorhizobium fredii strain HH103
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.