STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI30991.1Virulence-associated protein VapD; Cleaves ssRNA, mostly between U:A. Belongs to the VapD ribonuclease family. (100 aa)    
Predicted Functional Partners:
SHI30960.1
Hypothetical protein.
       0.779
murB
UDP-N-acetylmuramate dehydrogenase; Cell wall formation.
       0.773
SHI30934.1
Aspartate aminotransferase.
       0.752
SHI30909.1
Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family.
       0.542
SHI31047.1
Pyruvate decarboxylase/indolepyruvate decarboxylase.
       0.536
SHI30882.1
LemA protein.
       0.405
Your Current Organism:
Cruoricaptor ignavus
NCBI taxonomy Id: 1118202
Other names: C. ignavus, CCUG 62025, Cruoricaptor ignavus Yassin et al. 2013, DSM 25479, Flavobacteriaceae bacterium IMMIB L-12475, IMMIB L-12475
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.