STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI31911.1Biopolymer transport protein ExbD/TolR. (201 aa)    
Predicted Functional Partners:
SHI31858.1
Protein TonB.
 
 
 0.986
SHI31941.1
Biopolymer transport protein ExbB.
 
 
 0.982
SHI31806.1
Phosphate transport system substrate-binding protein.
 
    0.901
SHJ01236.1
Outer membrane transport energization protein TonB.
 
 
 0.852
SHI31885.1
Biopolymer transport protein ExbD.
 
   
0.851
SHI31779.1
Tfp pilus assembly protein PilF.
 
 
   0.836
SHJ01167.1
Biopolymer transport protein ExbB.
  
 
 0.813
ribB
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
   
 
 0.591
SHI31831.1
Hypothetical protein.
       0.530
SHI32129.1
Chemotaxis protein MotB.
  
 
 
 0.503
Your Current Organism:
Cruoricaptor ignavus
NCBI taxonomy Id: 1118202
Other names: C. ignavus, CCUG 62025, Cruoricaptor ignavus Yassin et al. 2013, DSM 25479, Flavobacteriaceae bacterium IMMIB L-12475, IMMIB L-12475
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.