STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI29398.1Autotransporter translocation and assembly factor TamB. (1567 aa)    
Predicted Functional Partners:
SHI65021.1
Hypothetical protein.
 
 
 0.873
SHI51180.1
Surface antigen.
 
   
 0.781
SHI68210.1
Protein of unknown function.
  
     0.775
SHI77707.1
Putative porin.
  
     0.773
SHJ01236.1
Outer membrane transport energization protein TonB.
  
     0.773
SHI31779.1
Tfp pilus assembly protein PilF.
  
     0.772
SHI65691.1
Hypothetical protein.
  
     0.771
SHI90848.1
Oxygen tolerance.
  
     0.771
SHI33388.1
Cytochrome oxidase Cu insertion factor, SCO1/SenC/PrrC family.
  
     0.770
SHI97684.1
Hypothetical protein.
  
     0.770
Your Current Organism:
Cruoricaptor ignavus
NCBI taxonomy Id: 1118202
Other names: C. ignavus, CCUG 62025, Cruoricaptor ignavus Yassin et al. 2013, DSM 25479, Flavobacteriaceae bacterium IMMIB L-12475, IMMIB L-12475
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.