STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI77177.1Putative rhamnosyl transferase. (270 aa)    
Predicted Functional Partners:
SHI77147.1
Glycosyltransferase, GT2 family.
 
     0.806
SHI77047.1
Asparagine synthase (glutamine-hydrolysing).
       0.774
SHI77082.1
Hypothetical protein.
  
    0.774
SHI77110.1
Hypothetical protein.
       0.773
SHI77210.1
Glycosyltransferase involved in cell wall bisynthesis.
       0.773
SHI77238.1
dTDP-4-amino-4,6-dideoxygalactose transaminase; Belongs to the DegT/DnrJ/EryC1 family.
       0.773
SHI77268.1
methionyl-tRNA formyltransferase.
       0.773
SHI77299.1
Transferase hexapeptide (six repeat-containing protein).
       0.773
SHI77359.1
Lipopolysaccharide transport system ATP-binding protein.
  
  
 0.736
SHI77330.1
Glycosyltransferase involved in cell wall bisynthesis.
  
    0.719
Your Current Organism:
Cruoricaptor ignavus
NCBI taxonomy Id: 1118202
Other names: C. ignavus, CCUG 62025, Cruoricaptor ignavus Yassin et al. 2013, DSM 25479, Flavobacteriaceae bacterium IMMIB L-12475, IMMIB L-12475
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