STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ORB03181.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (303 aa)    
Predicted Functional Partners:
ORB03180.1
LLM class F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.764
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
  
 0.743
ORB00595.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.607
ORB03179.1
Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.594
GlgP
Glycogen phosphorylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.496
ORA99061.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.486
ORB03177.1
Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.484
ORB03178.1
NADP-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.484
Nrp
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.474
ORB02533.1
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.473
Your Current Organism:
Mycolicibacter minnesotensis
NCBI taxonomy Id: 1118379
Other names: DSM 45633, JCM 17932, M. minnesotensis, Mycobacterium minnesotense, Mycobacterium minnesotense Hannigan et al. 2013, Mycobacterium sp. DL150B, Mycobacterium sp. DL184, Mycobacterium sp. DL189, Mycobacterium sp. DL215A, Mycobacterium sp. DL228B, Mycobacterium sp. DL47, Mycobacterium sp. DL477, Mycobacterium sp. DL482, Mycobacterium sp. DL49, Mycobacterium sp. DL604, Mycobacterium sp. DL630, Mycobacterium sp. DL678A, Mycobacterium sp. DL685, Mycolicibacter minnesotensis (Hannigan et al. 2013) Gupta et al. 2018, NCCB 100399, strain DL49
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