STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B5M09_008869Isopentenyl-diphosphate delta-isomerase. (246 aa)    
Predicted Functional Partners:
H257_00568
Diphosphomevalonate decarboxylase; Performs the first committed step in the biosynthesis of isoprenes.
  
 
 0.968
H257_15108
Uncharacterized protein; Belongs to the FPP/GGPP synthase family.
  
 
 0.940
H257_19385
Uncharacterized protein.
  
 
 0.932
H257_10419
Uncharacterized protein; Belongs to the FPP/GGPP synthase family.
  
 
 0.932
H257_01501
Uncharacterized protein; Belongs to the FPP/GGPP synthase family.
  
 
 0.921
H257_00370
Farnesyl-diphosphate farnesyltransferase.
 
 
 0.908
H257_13901
Terpene cyclase/mutase family member; Belongs to the terpene cyclase/mutase family.
  
 
 0.900
H257_05815
Hydroxymethylglutaryl-CoA synthase.
  
  
 0.872
B5M09_000638
Uncharacterized protein.
   
  
 0.860
H257_10320
Alkyl transferase; Belongs to the UPP synthase family.
  
 
 0.857
Your Current Organism:
Aphanomyces astaci
NCBI taxonomy Id: 112090
Other names: A. astaci
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.