H257_15261 protein (Aphanomyces astaci) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

H257_15261

Epimerase domain-containing protein. (332 aa)

Predicted Functional Partners:

H257_04494

0.944

H257_02062

0.942

B5M09_013859

0.941

H257_06577

0.940

DYB35_012096

0.939

DYB25_005223

0.938

B5M09_007026

0.936

H257_13479

0.936

B5M09_002921

0.935

B5M09_011313

0.935

Your Current Organism:

Aphanomyces astaci

NCBI taxonomy Id: 112090
Other names: A. astaci

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B5M09_002921	B5M09_007026	W4FPJ7	W4FJR2	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	40S ribosomal protein S20.	0.999
B5M09_002921	B5M09_011313	W4FPJ7	W4G170	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	Uncharacterized protein.	0.999
B5M09_002921	B5M09_013859	W4FPJ7	W4H5L5	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	0.999
B5M09_002921	DYB25_005223	W4FPJ7	W4G3C0	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.	0.999
B5M09_002921	DYB35_012096	W4FPJ7	W4FG75	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	S10_plectin domain-containing protein.	0.999
B5M09_002921	H257_02062	W4FPJ7	W4H593	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.	0.999
B5M09_002921	H257_04494	W4FPJ7	W4GY01	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family.	0.999
B5M09_002921	H257_06577	W4FPJ7	W4GLJ6	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	Archaeal ribosomal protein S17P.	0.999
B5M09_002921	H257_13479	W4FPJ7	W4FUB0	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family.	0.999
B5M09_002921	H257_15261	W4FPJ7	W4FPN4	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	Epimerase domain-containing protein.	0.935
B5M09_007026	B5M09_002921	W4FJR2	W4FPJ7	40S ribosomal protein S20.	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	0.999
B5M09_007026	B5M09_011313	W4FJR2	W4G170	40S ribosomal protein S20.	Uncharacterized protein.	0.999
B5M09_007026	B5M09_013859	W4FJR2	W4H5L5	40S ribosomal protein S20.	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	0.999
B5M09_007026	DYB25_005223	W4FJR2	W4G3C0	40S ribosomal protein S20.	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.	0.999
B5M09_007026	DYB35_012096	W4FJR2	W4FG75	40S ribosomal protein S20.	S10_plectin domain-containing protein.	0.999
B5M09_007026	H257_02062	W4FJR2	W4H593	40S ribosomal protein S20.	40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.	0.999
B5M09_007026	H257_04494	W4FJR2	W4GY01	40S ribosomal protein S20.	40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family.	0.999
B5M09_007026	H257_06577	W4FJR2	W4GLJ6	40S ribosomal protein S20.	Archaeal ribosomal protein S17P.	0.999
B5M09_007026	H257_13479	W4FJR2	W4FUB0	40S ribosomal protein S20.	Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family.	0.999
B5M09_007026	H257_15261	W4FJR2	W4FPN4	40S ribosomal protein S20.	Epimerase domain-containing protein.	0.936