STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B5M09_002415L51_S25_CI-B8 domain-containing protein. (134 aa)    
Predicted Functional Partners:
B5M09_002766
Uncharacterized protein.
   
 
 0.992
DYB28_012489
Ribosomal protein S16.
   
 
 0.991
B5M09_008621
MRP-L46 domain-containing protein.
   
 
 0.991
B5M09_008543
Ribosomal protein L34.
   
 
 0.990
B5M09_007790
Uncharacterized protein.
   
 
 0.989
B5M09_005900
40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.
   
 
 0.988
B5M09_011068
Ribosomal protein L11; Belongs to the universal ribosomal protein uL11 family.
   
 
 0.987
B5M09_003200
Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.
   
 
 0.987
B5M09_009737
50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
   
 
 0.986
B5M09_009562
Ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.
   
   0.986
Your Current Organism:
Aphanomyces astaci
NCBI taxonomy Id: 112090
Other names: A. astaci
Server load: low (28%) [HD]