STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H257_14228tRNA-intron endonuclease. (217 aa)    
Predicted Functional Partners:
H257_03123
tRNA_int_endo domain-containing protein.
    
 0.967
H257_14629
UPF0020 domain-containing protein.
    
   0.944
H257_11422
Protein CLP1 homolog; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation; Belongs to the Clp1 family. Clp1 subfamily.
    
 0.794
B5M09_002856
DUF1775 domain-containing protein.
    
 0.794
B5M09_002857
DUF1775 domain-containing protein.
    
 0.794
B5M09_002858
DUF1775 domain-containing protein.
    
 0.794
H257_08326
Uncharacterized protein.
    
 0.794
H257_10473
C2H2-type domain-containing protein.
   
    0.465
H257_05683
Protein MAK16 homolog; Belongs to the MAK16 family.
   
    0.424
H257_18268
Uncharacterized protein.
      
 0.422
Your Current Organism:
Aphanomyces astaci
NCBI taxonomy Id: 112090
Other names: A. astaci
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.