STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H257_12511t-SNARE coiled-coil homology domain-containing protein. (122 aa)    
Predicted Functional Partners:
B5M09_006603
t-SNARE coiled-coil homology domain-containing protein.
   
 0.998
H257_17572
Uncharacterized protein; Belongs to the synaptobrevin family.
    
 0.997
H257_07592
Uncharacterized protein.
    
 0.997
H257_16985
Uncharacterized protein; Belongs to the synaptobrevin family.
    
 0.993
H257_09138
t-SNARE coiled-coil homology domain-containing protein.
   
 0.992
H257_07702
t-SNARE coiled-coil homology domain-containing protein.
   
 0.992
H257_02374
Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.
   
 0.992
H257_06540
Uso1_p115_head domain-containing protein.
    
 0.981
H257_13477
Uncharacterized protein.
    
 0.928
H257_08587
Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.
    
 0.903
Your Current Organism:
Aphanomyces astaci
NCBI taxonomy Id: 112090
Other names: A. astaci
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.