STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H257_11450Sm domain-containing protein. (109 aa)    
Predicted Functional Partners:
B5M09_009023
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.983
H257_11608
Small nuclear ribonucleoprotein F.
   
 0.981
B5M09_006940
Small nuclear ribonucleoprotein G.
   
 0.977
H257_00889
Tr-type G domain-containing protein.
   
 0.971
H257_11764
Splicing factor subunit; Belongs to the SF3B5 family.
   
  0.967
B5M09_009955
PSP domain-containing protein.
   
 0.967
H257_10502
Pre-mRNA-processing-splicing factor 8.
   
 0.966
H257_08619
Uncharacterized protein.
    
 0.966
H257_08878
CPSF_A domain-containing protein.
    
 0.965
H257_17171
Uncharacterized protein.
   
 0.963
Your Current Organism:
Aphanomyces astaci
NCBI taxonomy Id: 112090
Other names: A. astaci
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.