STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H257_11537GPN-loop GTPase 3; Small GTPase required for proper nuclear import of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family. (264 aa)    
Predicted Functional Partners:
B5M09_008268
GPN-loop GTPase; Small GTPase required for proper nuclear import of RNA polymerase II (RNAPII). May act at an RNAP assembly step prior to nuclear import.
  
 
0.919
H257_08844
RTR1-type domain-containing protein.
    
 
 0.728
H257_13554
RPOLD domain-containing protein.
   
 
 0.720
H257_06806
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.707
B5M09_010053
DNA-directed RNA polymerase I, II, and III subunit rpabc5.
    
 
 0.697
B5M09_005626
Uncharacterized protein.
   
 
 0.694
H257_09157
RPOLD domain-containing protein.
   
 
 0.686
B5M09_001670
Uncharacterized protein.
   
 
 0.676
B5M09_009936
RNA_pol_L_2 domain-containing protein.
   
 
 0.671
B5M09_004737
Uncharacterized protein.
   
    0.658
Your Current Organism:
Aphanomyces astaci
NCBI taxonomy Id: 112090
Other names: A. astaci
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