STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B5M09_005081VPS9 domain-containing protein. (596 aa)    
Predicted Functional Partners:
DYB28_012968
Uncharacterized protein.
    
 0.685
B5M09_005631
Uncharacterized protein.
    
 0.685
H257_16546
Uncharacterized protein.
    
  0.565
H257_11823
CSD_1 domain-containing protein.
    
  0.565
H257_11821
Uncharacterized protein.
    
  0.565
B5M09_005881
KHA domain-containing protein.
    
  0.565
H257_07535
Uncharacterized protein.
    
  0.565
H257_15384
Uncharacterized protein.
    
 0.503
H257_18405
Cell division protein FtsZ.
    
 0.489
H257_11747
VPS9 domain-containing protein.
    
 0.489
Your Current Organism:
Aphanomyces astaci
NCBI taxonomy Id: 112090
Other names: A. astaci
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.