STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H257_10414CID domain-containing protein. (620 aa)    
Predicted Functional Partners:
H257_02463
Uncharacterized protein.
   
 0.996
H257_02858
Suf domain-containing protein.
    
 0.995
H257_03975
Cleavage and polyadenylation specificity factor subunit 2.
   
 0.991
B5M09_002442
Uncharacterized protein.
    
 0.988
H257_11878
CPSF_A domain-containing protein.
    
 0.987
H257_05475
Uncharacterized protein.
    
 0.984
H257_00022
RRM domain-containing protein.
    
 0.971
H257_17216
Fip1 domain-containing protein.
    
 0.968
H257_15290
Uncharacterized protein.
   
 
 0.960
H257_11422
Protein CLP1 homolog; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation; Belongs to the Clp1 family. Clp1 subfamily.
    
 0.927
Your Current Organism:
Aphanomyces astaci
NCBI taxonomy Id: 112090
Other names: A. astaci
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.