H257_10459 protein (Aphanomyces astaci) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

H257_10459

Uncharacterized protein; Belongs to the peptidase C19 family. (1449 aa)

Predicted Functional Partners:

B5M09_012894

0.661

B5M09_004925

0.653

H257_11344

0.650

B5M09_000065

0.628

B5M09_008026

0.626

B5M09_011068

0.624

B5M09_010030

0.623

B5M09_008636

0.621

H257_17545

0.609

DYB34_001205

0.607

Your Current Organism:

Aphanomyces astaci

NCBI taxonomy Id: 112090
Other names: A. astaci

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B5M09_000065	B5M09_008026	W4GNT2	W4GYX6	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	50S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	0.997
B5M09_000065	B5M09_008636	W4GNT2	W4GCK4	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	Ribosomal protein L21.	0.998
B5M09_000065	B5M09_010030	W4GNT2	W4FT06	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.	0.996
B5M09_000065	B5M09_011068	W4GNT2	W4G3B0	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	Ribosomal protein L11; Belongs to the universal ribosomal protein uL11 family.	0.997
B5M09_000065	DYB34_001205	W4GNT2	W4HBC8	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	50S ribosomal protein L4.	0.996
B5M09_000065	H257_10459	W4GNT2	W4G8J3	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	Uncharacterized protein; Belongs to the peptidase C19 family.	0.628
B5M09_000065	H257_17545	W4GNT2	W4FE94	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	60S ribosomal protein.	0.998
B5M09_004925	B5M09_012894	W4FWK7	W4H5L1	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.820
B5M09_004925	H257_10459	W4FWK7	W4G8J3	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Uncharacterized protein; Belongs to the peptidase C19 family.	0.653
B5M09_004925	H257_11344	W4FWK7	W4G2W3	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Ubiquitin-60S ribosomal protein L40.	0.999
B5M09_008026	B5M09_000065	W4GYX6	W4GNT2	50S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.997
B5M09_008026	B5M09_008636	W4GYX6	W4GCK4	50S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein L21.	0.997
B5M09_008026	B5M09_010030	W4GYX6	W4FT06	50S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.	0.975
B5M09_008026	B5M09_011068	W4GYX6	W4G3B0	50S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein L11; Belongs to the universal ribosomal protein uL11 family.	0.998
B5M09_008026	DYB34_001205	W4GYX6	W4HBC8	50S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	50S ribosomal protein L4.	0.998
B5M09_008026	H257_10459	W4GYX6	W4G8J3	50S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	Uncharacterized protein; Belongs to the peptidase C19 family.	0.626
B5M09_008026	H257_11344	W4GYX6	W4G2W3	50S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	Ubiquitin-60S ribosomal protein L40.	0.990
B5M09_008026	H257_17545	W4GYX6	W4FE94	50S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	60S ribosomal protein.	0.995
B5M09_008636	B5M09_000065	W4GCK4	W4GNT2	Ribosomal protein L21.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.998
B5M09_008636	B5M09_008026	W4GCK4	W4GYX6	Ribosomal protein L21.	50S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	0.997