B5M09_007591 protein (Aphanomyces astaci) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

B5M09_007591

Uncharacterized protein. (184 aa)

Predicted Functional Partners:

H257_08082

0.999

H257_07072

0.999

B5M09_012519

0.999

B5M09_010769

0.999

B5M09_005217

0.999

B5M09_007021

0.995

H257_09597

0.995

H257_10372

0.988

H257_04657

0.988

H257_00019

0.968

Your Current Organism:

Aphanomyces astaci

NCBI taxonomy Id: 112090
Other names: A. astaci

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B5M09_005217	B5M09_007021	W4H9Q2	W4FDW2	ATP synthase F1, delta subunit.	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.996
B5M09_005217	B5M09_007591	W4H9Q2	W4GAF8	ATP synthase F1, delta subunit.	Uncharacterized protein.	0.999
B5M09_005217	B5M09_010769	W4H9Q2	W4H182	ATP synthase F1, delta subunit.	ATP-synt_DE_N domain-containing protein.	0.999
B5M09_005217	B5M09_012519	W4H9Q2	W4GUD8	ATP synthase F1, delta subunit.	Uncharacterized protein.	0.998
B5M09_005217	H257_00019	W4H9Q2	W4H8X9	ATP synthase F1, delta subunit.	Uncharacterized protein.	0.987
B5M09_005217	H257_04657	W4H9Q2	W4GVD0	ATP synthase F1, delta subunit.	V-type ATPase, C subunit; Belongs to the V-ATPase proteolipid subunit family.	0.997
B5M09_005217	H257_07072	W4H9Q2	W4GLS6	ATP synthase F1, delta subunit.	ATP synthase subunit gamma.	0.999
B5M09_005217	H257_08082	W4H9Q2	W4GFY0	ATP synthase F1, delta subunit.	ATP-synt_ab domain-containing protein.	0.999
B5M09_005217	H257_09597	W4H9Q2	W4GBG8	ATP synthase F1, delta subunit.	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.996
B5M09_005217	H257_10372	W4H9Q2	W4G892	ATP synthase F1, delta subunit.	V-type proton ATPase proteolipid subunit; Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	0.998
B5M09_007021	B5M09_005217	W4FDW2	W4H9Q2	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP synthase F1, delta subunit.	0.996
B5M09_007021	B5M09_007591	W4FDW2	W4GAF8	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Uncharacterized protein.	0.995
B5M09_007021	B5M09_010769	W4FDW2	W4H182	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP-synt_DE_N domain-containing protein.	0.996
B5M09_007021	B5M09_012519	W4FDW2	W4GUD8	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Uncharacterized protein.	0.981
B5M09_007021	H257_04657	W4FDW2	W4GVD0	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	V-type ATPase, C subunit; Belongs to the V-ATPase proteolipid subunit family.	0.942
B5M09_007021	H257_07072	W4FDW2	W4GLS6	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP synthase subunit gamma.	0.997
B5M09_007021	H257_08082	W4FDW2	W4GFY0	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP-synt_ab domain-containing protein.	0.997
B5M09_007021	H257_09597	W4FDW2	W4GBG8	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.543
B5M09_007021	H257_10372	W4FDW2	W4G892	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	V-type proton ATPase proteolipid subunit; Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	0.957
B5M09_007591	B5M09_005217	W4GAF8	W4H9Q2	Uncharacterized protein.	ATP synthase F1, delta subunit.	0.999