STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B5M09_005994Uncharacterized protein. (829 aa)    
Predicted Functional Partners:
H257_13554
RPOLD domain-containing protein.
   
 0.780
DYB25_009441
Uncharacterized protein.
    
  0.747
H257_12253
mRNA cap guanine-N7 methyltransferase.
   
 0.743
B5M09_004604
RPOL4c domain-containing protein.
    
  0.731
H257_09157
RPOLD domain-containing protein.
    
  0.705
H257_14157
RPOL9 domain-containing protein.
    
  0.704
H257_12999
Uncharacterized protein.
    
 0.704
H257_12622
Uncharacterized protein.
    
 0.704
H257_06806
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
  0.698
DYB25_005359
Nuclear cap-binding protein subunit 2.
   
 
 0.696
Your Current Organism:
Aphanomyces astaci
NCBI taxonomy Id: 112090
Other names: A. astaci
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