H257_05996 protein (Aphanomyces astaci) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

H257_05996

Uncharacterized protein. (885 aa)

Predicted Functional Partners:

H257_18858

0.857

H257_12780

0.857

H257_02619

0.857

H257_04471

0.711

B5M09_007942

0.645

B5M09_007222

0.635

H257_15963

0.632

H257_18421

0.615

H257_18428

0.615

H257_09986

0.592

Your Current Organism:

Aphanomyces astaci

NCBI taxonomy Id: 112090
Other names: A. astaci

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B5M09_007222	H257_04471	W4FHW9	W4GW15	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.	WD_REPEATS_REGION domain-containing protein.	0.949
B5M09_007222	H257_05996	W4FHW9	W4GR57	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.	Uncharacterized protein.	0.635
B5M09_007222	H257_09986	W4FHW9	W4G796	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.	0.999
B5M09_007222	H257_18421	W4FHW9	W4FB54	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.	Uncharacterized protein.	0.760
B5M09_007222	H257_18428	W4FHW9	W4FCW9	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.	Ipi1_N domain-containing protein.	0.760
B5M09_007942	H257_05996	W4GQD5	W4GR57	40S ribosomal protein S14.	Uncharacterized protein.	0.645
H257_02619	H257_05996	W4H4V1	W4GR57	Uncharacterized protein.	Uncharacterized protein.	0.857
H257_04471	B5M09_007222	W4GW15	W4FHW9	WD_REPEATS_REGION domain-containing protein.	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.	0.949
H257_04471	H257_05996	W4GW15	W4GR57	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.711
H257_04471	H257_09986	W4GW15	W4G796	WD_REPEATS_REGION domain-containing protein.	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.	0.972
H257_04471	H257_18421	W4GW15	W4FB54	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.984
H257_04471	H257_18428	W4GW15	W4FCW9	WD_REPEATS_REGION domain-containing protein.	Ipi1_N domain-containing protein.	0.984
H257_05996	B5M09_007222	W4GR57	W4FHW9	Uncharacterized protein.	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.	0.635
H257_05996	B5M09_007942	W4GR57	W4GQD5	Uncharacterized protein.	40S ribosomal protein S14.	0.645
H257_05996	H257_02619	W4GR57	W4H4V1	Uncharacterized protein.	Uncharacterized protein.	0.857
H257_05996	H257_04471	W4GR57	W4GW15	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.711
H257_05996	H257_09986	W4GR57	W4G796	Uncharacterized protein.	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.	0.592
H257_05996	H257_12780	W4GR57	W4FYR5	Uncharacterized protein.	Uncharacterized protein.	0.857
H257_05996	H257_15963	W4GR57	W4FKK5	Uncharacterized protein.	LTD domain-containing protein.	0.632
H257_05996	H257_18421	W4GR57	W4FB54	Uncharacterized protein.	Uncharacterized protein.	0.615