STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H257_04921FYVE-type domain-containing protein. (816 aa)    
Predicted Functional Partners:
H257_05123
Uncharacterized protein.
    
 0.809
H257_11344
Ubiquitin-60S ribosomal protein L40.
    
  0.719
H257_07397
Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.
    
 0.706
H257_14602
Ubiquitin-like domain-containing protein.
    
  0.673
H257_11425
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
    
  0.673
H257_07035
Ubiquitin-40S ribosomal protein S27a.
    
  0.673
H257_02556
Polyubiquitin.
    
  0.673
H257_12789
PI3K/PI4K domain-containing protein.
    
 0.643
H257_10722
PI3K/PI4K domain-containing protein.
    
 0.643
H257_05384
Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process.
    
 0.638
Your Current Organism:
Aphanomyces astaci
NCBI taxonomy Id: 112090
Other names: A. astaci
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.