STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H257_05001Diaminopimelate decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family. (429 aa)    
Predicted Functional Partners:
H257_05638
Aspartokinase; Belongs to the aspartokinase family.
   
 0.957
B5M09_011856
Spermidine synthase; Belongs to the spermidine/spermine synthase family.
  
 0.774
B5M09_000418
Diaminopimelate epimerase, variant.
  
 0.762
B5M09_009495
Aspartate-semialdehyde dehydrogenase.
  
 
 0.754
DYB35_010889
Aspartate aminotransferase.
     
 0.702
H257_01490
Argininosuccinate lyase.
  
 
 0.690
H257_05065
Arginase; Belongs to the arginase family.
  
 
 0.686
H257_06187
Biotin synthase.
    
 0.683
B5M09_002251
26S protease regulatory subunit 8; Belongs to the AAA ATPase family.
    
 0.651
H257_11582
Adenylosuccinate synthetase; Plays an important role in the de novo pathway and in the salvage pathway of purine nucleotide biosynthesis. Catalyzes the first commited step in the biosynthesis of AMP from IMP.
   
 
 0.645
Your Current Organism:
Aphanomyces astaci
NCBI taxonomy Id: 112090
Other names: A. astaci
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.