STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H257_0382618S rRNA biogenesis protein RCL1. (381 aa)    
Predicted Functional Partners:
H257_11532
Bms1-type G domain-containing protein.
   
 0.999
H257_16898
WD_REPEATS_REGION domain-containing protein.
   
 0.997
H257_12556
Uncharacterized protein.
   
 0.997
H257_01817
Uncharacterized protein.
   
 0.997
H257_13338
WD_REPEATS_REGION domain-containing protein.
   
 0.996
H257_10750
BP28CT domain-containing protein.
   
 0.996
H257_03962
CBF domain-containing protein.
   
 
 0.995
B5M09_005238
WD_REPEATS_REGION domain-containing protein.
   
 0.994
H257_06028
Uncharacterized protein.
   
 0.994
B5M09_001260
Brix domain-containing protein.
   
 0.993
Your Current Organism:
Aphanomyces astaci
NCBI taxonomy Id: 112090
Other names: A. astaci
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.