DYB35_005267 protein (Aphanomyces astaci) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DYB35_005267

Uncharacterized protein. (343 aa)

Predicted Functional Partners:

H257_18858

0.793

H257_12780

0.793

H257_02619

0.793

H257_05857

0.577

H257_19522

0.443

H257_15510

0.417

H257_03169

0.417

Your Current Organism:

Aphanomyces astaci

NCBI taxonomy Id: 112090
Other names: A. astaci

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DYB35_005267	H257_02619	W4H392	W4H4V1	Uncharacterized protein.	Uncharacterized protein.	0.793
DYB35_005267	H257_03169	W4H392	W4H0A1	Uncharacterized protein.	TKL protein kinase.	0.417
DYB35_005267	H257_05857	W4H392	W4GNL5	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.577
DYB35_005267	H257_12780	W4H392	W4FYR5	Uncharacterized protein.	Uncharacterized protein.	0.793
DYB35_005267	H257_15510	W4H392	W4FLW2	Uncharacterized protein.	Uncharacterized protein.	0.417
DYB35_005267	H257_18858	W4H392	W4FBZ1	Uncharacterized protein.	Uncharacterized protein.	0.793
DYB35_005267	H257_19522	W4H392	W4F7Z6	Uncharacterized protein.	Uncharacterized protein.	0.443
H257_02619	DYB35_005267	W4H4V1	W4H392	Uncharacterized protein.	Uncharacterized protein.	0.793
H257_02619	H257_03169	W4H4V1	W4H0A1	Uncharacterized protein.	TKL protein kinase.	0.838
H257_02619	H257_05857	W4H4V1	W4GNL5	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.626
H257_02619	H257_15510	W4H4V1	W4FLW2	Uncharacterized protein.	Uncharacterized protein.	0.838
H257_03169	DYB35_005267	W4H0A1	W4H392	TKL protein kinase.	Uncharacterized protein.	0.417
H257_03169	H257_02619	W4H0A1	W4H4V1	TKL protein kinase.	Uncharacterized protein.	0.838
H257_03169	H257_05857	W4H0A1	W4GNL5	TKL protein kinase.	WD_REPEATS_REGION domain-containing protein.	0.498
H257_03169	H257_12780	W4H0A1	W4FYR5	TKL protein kinase.	Uncharacterized protein.	0.838
H257_03169	H257_18858	W4H0A1	W4FBZ1	TKL protein kinase.	Uncharacterized protein.	0.838
H257_05857	DYB35_005267	W4GNL5	W4H392	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.577
H257_05857	H257_02619	W4GNL5	W4H4V1	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.626
H257_05857	H257_03169	W4GNL5	W4H0A1	WD_REPEATS_REGION domain-containing protein.	TKL protein kinase.	0.498
H257_05857	H257_12780	W4GNL5	W4FYR5	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.626