B5M09_002247 protein (Aphanomyces astaci) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

B5M09_002247

WD_REPEATS_REGION domain-containing protein. (490 aa)

Predicted Functional Partners:

H257_08192

0.953

H257_09986

0.938

H257_13338

0.931

H257_00217

0.914

B5M09_004261

0.913

H257_00285

0.906

H257_00280

0.905

H257_01526

0.896

H257_01817

0.894

H257_06227

0.893

Your Current Organism:

Aphanomyces astaci

NCBI taxonomy Id: 112090
Other names: A. astaci

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B5M09_002247	B5M09_004261	W4H4P6	W4G4J4	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.913
B5M09_002247	H257_00217	W4H4P6	W4HAV7	WD_REPEATS_REGION domain-containing protein.	60S ribosomal protein; Belongs to the universal ribosomal protein uL3 family.	0.914
B5M09_002247	H257_00280	W4H4P6	W4HB38	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.905
B5M09_002247	H257_00285	W4H4P6	W4HA31	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.906
B5M09_002247	H257_01526	W4H4P6	W4H864	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.896
B5M09_002247	H257_01817	W4H4P6	W4H6H4	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.894
B5M09_002247	H257_06227	W4H4P6	W4GMZ0	WD_REPEATS_REGION domain-containing protein.	Brix domain-containing protein.	0.893
B5M09_002247	H257_08192	W4H4P6	W4GG65	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.953
B5M09_002247	H257_09986	W4H4P6	W4G796	WD_REPEATS_REGION domain-containing protein.	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.	0.938
B5M09_002247	H257_13338	W4H4P6	W4FVE0	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.931
B5M09_004261	B5M09_002247	W4G4J4	W4H4P6	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.913
B5M09_004261	H257_00217	W4G4J4	W4HAV7	Uncharacterized protein.	60S ribosomal protein; Belongs to the universal ribosomal protein uL3 family.	0.641
B5M09_004261	H257_00280	W4G4J4	W4HB38	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.827
B5M09_004261	H257_00285	W4G4J4	W4HA31	Uncharacterized protein.	Uncharacterized protein.	0.946
B5M09_004261	H257_01526	W4G4J4	W4H864	Uncharacterized protein.	Uncharacterized protein.	0.775
B5M09_004261	H257_01817	W4G4J4	W4H6H4	Uncharacterized protein.	Uncharacterized protein.	0.907
B5M09_004261	H257_06227	W4G4J4	W4GMZ0	Uncharacterized protein.	Brix domain-containing protein.	0.989
B5M09_004261	H257_08192	W4G4J4	W4GG65	Uncharacterized protein.	Uncharacterized protein.	0.944
B5M09_004261	H257_09986	W4G4J4	W4G796	Uncharacterized protein.	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.	0.951
B5M09_004261	H257_13338	W4G4J4	W4FVE0	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.869