STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B5M09_003655Uncharacterized protein. (1059 aa)    
Predicted Functional Partners:
H257_06806
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.832
H257_14157
RPOL9 domain-containing protein.
    
 0.824
B5M09_005626
Uncharacterized protein.
    
 0.824
H257_13554
RPOLD domain-containing protein.
    
 0.824
B5M09_004604
RPOL4c domain-containing protein.
    
 0.824
DYB25_009441
Uncharacterized protein.
    
 0.824
H257_07135
DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.
    
 0.824
B5M09_010053
DNA-directed RNA polymerase I, II, and III subunit rpabc5.
    
 0.824
B5M09_001670
Uncharacterized protein.
    
 0.824
H257_02616
RNA_pol_L_2 domain-containing protein.
    
 0.824
Your Current Organism:
Aphanomyces astaci
NCBI taxonomy Id: 112090
Other names: A. astaci
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