STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFA71149.1Stage V sporulation protein B. (554 aa)    
Predicted Functional Partners:
SFA71176.1
Hypothetical protein.
       0.807
SFA71196.1
Hypothetical protein.
       0.807
SFA71127.1
Protein of unknown function.
       0.706
ybeY
Probable rRNA maturation factor; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
       0.651
SFA71070.1
Phosphate starvation-inducible protein PhoH.
     
 0.640
SFB24764.1
Uncharacterized protein, UPF0297 family; Belongs to the UPF0297 family.
  
     0.639
SFB03613.1
Ribosomal protein L7Ae.
  
     0.638
SFA71407.1
Rod shape-determining protein MreD.
 
    0.539
SFA79722.1
tRNA (adenine22-N1)-methyltransferase.
  
     0.528
SFA94600.1
Hypothetical protein.
  
     0.519
Your Current Organism:
Acetitomaculum ruminis
NCBI taxonomy Id: 1120918
Other names: A. ruminis DSM 5522, Acetitomaculum ruminis DSM 5522
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