STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFB07668.1AraC-type DNA-binding protein. (323 aa)    
Predicted Functional Partners:
SFB07689.1
ATP-binding cassette, subfamily B.
 
    0.838
SFA70379.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
     
 0.832
SFB07715.1
ATP-binding cassette, subfamily B.
 
    0.802
SFB32144.1
Energy-coupling factor transport system substrate-specific component.
 
     0.775
SFB32130.1
Energy-coupling factor transport system permease protein.
 
     0.710
ribBA
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
 0.660
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.612
SFA97143.1
Energy-coupling factor transport system substrate-specific component.
 
     0.611
SFB34666.1
Energy-coupling factor transport system substrate-specific component.
 
     0.582
SFB00132.1
Energy-coupling factor transport system substrate-specific component.
 
     0.570
Your Current Organism:
Acetitomaculum ruminis
NCBI taxonomy Id: 1120918
Other names: A. ruminis DSM 5522, Acetitomaculum ruminis DSM 5522
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.