STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFB07083.1Predicted nuclease of restriction endonuclease-like (RecB) superfamily, DUF1016 family. (389 aa)    
Predicted Functional Partners:
SFB07063.1
Protein of unknown function.
       0.773
SFB07023.1
Hypothetical protein.
       0.658
SFB07042.1
Helix-turn-helix.
       0.658
SFA99238.1
ORF6N domain-containing protein.
 
     0.646
SFB07412.1
Hypothetical protein.
 
     0.565
SFB06976.1
Fic/DOC family protein.
 
     0.551
SFA99289.1
Hypothetical protein.
 
     0.508
SFB05470.1
Superfamily II DNA or RNA helicase, SNF2 family.
 
     0.466
Your Current Organism:
Acetitomaculum ruminis
NCBI taxonomy Id: 1120918
Other names: A. ruminis DSM 5522, Acetitomaculum ruminis DSM 5522
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.