STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFB40160.1Regulatory protein, luxR family. (249 aa)    
Predicted Functional Partners:
SFB40147.1
Hypothetical protein.
       0.773
SFA95014.1
Protein of unknown function.
  
     0.488
SFB40129.1
Transposase IS200 like.
       0.455
SFB26557.1
NitT/TauT family transport system substrate-binding protein.
  
     0.429
SFB26465.1
Taurine---2-oxoglutarate transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
     0.425
SFA84699.1
Guanylate kinase.
  
  
  0.401
SFA92885.1
DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains.
     
 0.401
SFB13413.1
Response regulator receiver domain-containing protein.
     
 0.401
SFB23574.1
DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains.
     
 0.401
SFB39102.1
DNA adenine methylase.
     
 0.401
Your Current Organism:
Acetitomaculum ruminis
NCBI taxonomy Id: 1120918
Other names: A. ruminis DSM 5522, Acetitomaculum ruminis DSM 5522
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.