STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHE29406.1Choline dehydrogenase. (536 aa)    
Predicted Functional Partners:
SHF20890.1
Hypothetical protein.
    
 0.958
SHE51790.1
Cytochrome C oxidase, cbb3-type, subunit III.
 
 
 
 0.910
SHF18680.1
Nicotinate dehydrogenase subunit B.
   
 
 0.908
SHF32569.1
Cytochrome c.
   
 
 0.875
SHE68972.1
Hypothetical protein.
    
 0.844
SHE95228.1
Hypothetical protein.
    
 0.844
SHF52690.1
Tfp pilus assembly protein PilF.
   
 0.790
SHE99582.1
Sulfotransferase family protein.
    
  0.772
SHF21121.1
Flp pilus assembly protein TadD, contains TPR repeats.
    
  0.772
SHF32660.1
Tfp pilus assembly protein PilF.
    
  0.772
Your Current Organism:
Acidocella aminolytica
NCBI taxonomy Id: 1120923
Other names: A. aminolytica 101 = DSM 11237, Acidocella aminolytica 101, Acidocella aminolytica 101 = DSM 11237, Acidocella aminolytica DSM 11237, Acidocella aminolytica DSM 11237 = 101
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.