STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHE38213.1Poly(3-hydroxybutyrate) depolymerase. (405 aa)    
Predicted Functional Partners:
SHE30843.1
Polyhydroxyalkanoate synthase.
 
  
 0.874
SHF42680.1
Polyhydroxyalkanoate synthase.
 
  
 0.874
SHF26549.1
Polyhydroxyalkanoate synthase.
 
  
 0.870
SHE57726.1
Polyhydroxyalkanoate synthase.
 
  
 0.866
SHE95157.1
Polyhydroxyalkanoate synthase.
 
  
 0.822
SHE38193.1
Glutathione S-transferase.
 
     0.629
SHE95212.1
Polyhydroxyalkanoate synthesis repressor PhaR.
 
   
 0.620
clpX
ATP-dependent Clp protease ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.
   
    0.459
SHE29621.1
3-hydroxybutyrate dehydrogenase.
  
     0.408
Your Current Organism:
Acidocella aminolytica
NCBI taxonomy Id: 1120923
Other names: A. aminolytica 101 = DSM 11237, Acidocella aminolytica 101, Acidocella aminolytica 101 = DSM 11237, Acidocella aminolytica DSM 11237, Acidocella aminolytica DSM 11237 = 101
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