STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHE44008.1Lipopolysaccharide export system protein LptC. (219 aa)    
Predicted Functional Partners:
SHE43981.1
Lipopolysaccharide export system protein LptA.
 
   
 0.960
SHE43954.1
Lipopolysaccharide export system ATP-binding protein.
 
     0.860
SHE44033.1
Hypothetical protein.
       0.773
SHE75733.1
Beta-barrel assembly machine subunit BamF.
  
     0.753
lptD
LPS-assembly protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
 
   
 0.739
SHF08975.1
Protein of unknown function.
  
     0.733
SHE44068.1
Ribonuclease D.
 
     0.732
SHE43928.1
RNA polymerase, sigma 54 subunit, RpoN/SigL; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
     0.722
SHE99724.1
Periplasmic chaperone for outer membrane proteins Skp.
  
     0.719
SHE87524.1
Uncharacterized SAM-binding protein YcdF, DUF218 family.
  
     0.713
Your Current Organism:
Acidocella aminolytica
NCBI taxonomy Id: 1120923
Other names: A. aminolytica 101 = DSM 11237, Acidocella aminolytica 101, Acidocella aminolytica 101 = DSM 11237, Acidocella aminolytica DSM 11237, Acidocella aminolytica DSM 11237 = 101
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.