STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHE46069.1Ribose transport system substrate-binding protein. (334 aa)    
Predicted Functional Partners:
SHE46056.1
Monosaccharide ABC transporter membrane protein, CUT2 family (TC 3.A.1.2.-); Belongs to the binding-protein-dependent transport system permease family.
 0.998
SHF10860.1
Two-component system, sensor histidine kinase RpfC.
   
 0.996
SHF21082.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
   
 0.994
SHE67138.1
Monosaccharide ABC transporter membrane protein, CUT2 family; Belongs to the binding-protein-dependent transport system permease family.
 0.992
SHF52632.1
Signal transduction histidine kinase.
   
 0.988
SHF46877.1
D-xylose transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
  
 0.984
SHE46035.1
D-xylose transport system ATP-binding protein.
 
 0.980
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
 
  
 0.943
SHE76343.1
Response regulator receiver domain-containing protein.
   
 0.939
SHE46019.1
Transcriptional regulator, LacI family.
 
 
 0.934
Your Current Organism:
Acidocella aminolytica
NCBI taxonomy Id: 1120923
Other names: A. aminolytica 101 = DSM 11237, Acidocella aminolytica 101, Acidocella aminolytica 101 = DSM 11237, Acidocella aminolytica DSM 11237, Acidocella aminolytica DSM 11237 = 101
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.