STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHE83031.1Transcriptional regulator, DeoR family. (252 aa)    
Predicted Functional Partners:
SHF53448.1
Fructose-1-phosphate kinase; Belongs to the carbohydrate kinase PfkB family.
 
  
 0.933
SHE65071.1
Acetyltransferase.
    
   0.920
SHF53464.1
PTS system D-fructose-specific IIB component (F1P-forming), Frc family /PTS system D-fructose-specific IIC component (F1P-forming), Frc family.
 
  
 0.898
SHE39392.1
Ribose 5-phosphate isomerase B.
  
 
 0.601
SHF53428.1
Phosphocarrier protein HPr.
 
  
 0.594
SHF49868.1
Phosphocarrier protein FPr; Belongs to the PEP-utilizing enzyme family.
 
  
 0.588
SHF66021.1
Homodimeric glycerol 3-phosphate dehydrogenase (quinone).
 
  
 0.518
SHE83056.1
Membrane protein YqaA, SNARE-associated domain.
       0.497
SHE83072.1
Peptidyl-prolyl cis-trans isomerase SurA.
       0.497
lptD
LPS-assembly protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
       0.497
Your Current Organism:
Acidocella aminolytica
NCBI taxonomy Id: 1120923
Other names: A. aminolytica 101 = DSM 11237, Acidocella aminolytica 101, Acidocella aminolytica 101 = DSM 11237, Acidocella aminolytica DSM 11237, Acidocella aminolytica DSM 11237 = 101
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.