STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF16936.1Diguanylate cyclase (GGDEF) domain-containing protein. (626 aa)    
Predicted Functional Partners:
SHE76343.1
Response regulator receiver domain-containing protein.
 
 0.999
SHF10860.1
Two-component system, sensor histidine kinase RpfC.
 0.999
SHF21082.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
 0.999
SHE45242.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
 0.998
SHF52632.1
Signal transduction histidine kinase.
  
 0.998
SHF14324.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
 0.997
SHE86710.1
Methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor.
 
 0.994
SHF34676.1
Methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor.
 
 0.994
SHE46120.1
PAS fold-containing protein.
 0.990
SHF10836.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
 
 
0.987
Your Current Organism:
Acidocella aminolytica
NCBI taxonomy Id: 1120923
Other names: A. aminolytica 101 = DSM 11237, Acidocella aminolytica 101, Acidocella aminolytica 101 = DSM 11237, Acidocella aminolytica DSM 11237, Acidocella aminolytica DSM 11237 = 101
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