STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF21451.1Transposase domain. (95 aa)    
Predicted Functional Partners:
SHE92256.1
Transposase DDE domain-containing protein.
 
     0.971
SHE51886.1
Transposase DDE domain-containing protein.
 
     0.969
SHF47334.1
Transposase DDE domain-containing protein.
 
     0.923
SHF37971.1
Transposase DDE domain-containing protein.
 
     0.858
SHE90908.1
Transposase DDE domain-containing protein.
 
     0.838
SHF48398.1
Transposase DDE domain-containing protein.
  
     0.570
SHF21429.1
Hypothetical protein.
       0.539
SHE50291.1
Transposase DDE domain-containing protein.
 
     0.537
SHF13293.1
Transposase DDE domain-containing protein.
 
     0.537
SHF00660.1
Transposase DDE domain-containing protein.
 
     0.502
Your Current Organism:
Acidocella aminolytica
NCBI taxonomy Id: 1120923
Other names: A. aminolytica 101 = DSM 11237, Acidocella aminolytica 101, Acidocella aminolytica 101 = DSM 11237, Acidocella aminolytica DSM 11237, Acidocella aminolytica DSM 11237 = 101
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