STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF24295.1DNA-binding transcriptional regulator, MerR family. (227 aa)    
Predicted Functional Partners:
rpoD
RNA polymerase, sigma 70 subunit, RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
   
 
 0.812
SHF24255.1
Copper-(or silver)-translocating P-type ATPase.
  
  
 0.789
SHF51688.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
    
 0.780
SHF24280.1
Cytochrome c-type biogenesis protein.
       0.774
SHE45866.1
Urea carboxylase precursor.
   
 0.646
SHE76343.1
Response regulator receiver domain-containing protein.
    
 0.631
SHE51913.1
Malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+).
    
  0.596
SHF45488.1
Allosteric NADP-dependent malic enzyme.
    
  0.596
SHE36011.1
DNA-binding transcriptional regulator, MerR family.
  
     0.578
SHE46120.1
PAS fold-containing protein.
    
 0.560
Your Current Organism:
Acidocella aminolytica
NCBI taxonomy Id: 1120923
Other names: A. aminolytica 101 = DSM 11237, Acidocella aminolytica 101, Acidocella aminolytica 101 = DSM 11237, Acidocella aminolytica DSM 11237, Acidocella aminolytica DSM 11237 = 101
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.