STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF34194.1DDE superfamily endonuclease. (115 aa)    
Predicted Functional Partners:
SHF14579.1
DDE superfamily endonuclease.
 
     0.772
SHF24468.1
Hypothetical protein.
  
  
 0.698
SHF10049.1
AAA domain-containing protein.
  
    0.580
SHF10072.1
Protein of unknown function.
  
    0.580
SHF34167.1
Putative transposase of IS4/5 family.
 
     0.579
SHE31198.1
Hypothetical protein.
  
    0.532
SHF34222.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
       0.493
Your Current Organism:
Acidocella aminolytica
NCBI taxonomy Id: 1120923
Other names: A. aminolytica 101 = DSM 11237, Acidocella aminolytica 101, Acidocella aminolytica 101 = DSM 11237, Acidocella aminolytica DSM 11237, Acidocella aminolytica DSM 11237 = 101
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.