STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF55667.1Cobaltochelatase CobT subunit. (624 aa)    
Predicted Functional Partners:
SHF55646.1
Cobaltochelatase CobS subunit.
 
 
 0.999
SHF55617.1
DnaJ domain-containing protein.
 
     0.897
SHF04977.1
Cobaltochelatase CobN subunit.
     
 0.819
atpF
F-type H+-transporting ATPase subunit b; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.
  
     0.679
SHE97133.1
Hypothetical protein.
  
     0.656
SHF33259.1
Uncharacterized protein, UPF0262 family.
  
     0.652
SHF47211.1
ATP-dependent helicase/nuclease subunit B.
  
     0.637
SHF21338.1
ATP-dependent RNA helicase SUPV3L1/SUV3.
  
     0.616
SHE51420.1
Protein of unknown function.
  
     0.594
SHE55143.1
Modification methylase; Belongs to the N(4)/N(6)-methyltransferase family.
 
     0.593
Your Current Organism:
Acidocella aminolytica
NCBI taxonomy Id: 1120923
Other names: A. aminolytica 101 = DSM 11237, Acidocella aminolytica 101, Acidocella aminolytica 101 = DSM 11237, Acidocella aminolytica DSM 11237, Acidocella aminolytica DSM 11237 = 101
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