STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF58191.1Hypothetical protein. (562 aa)    
Predicted Functional Partners:
SHF58157.1
Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase.
  
 
 0.914
SHF55577.1
Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase.
  
 
 0.850
SHF08117.1
Flagellar basal-body rod protein FlgG; Belongs to the flagella basal body rod proteins family.
   
   0.802
SHF43874.1
Glycosyltransferase, GT2 family.
  
    0.759
SHF47228.1
MobA-like NTP transferase domain-containing protein.
  
 0.754
SHF58179.1
Hypothetical protein.
  
 
 0.754
SHE32269.1
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
 
  
 0.750
SHE96950.1
UDP-glucose pyrophosphorylase.
    
 0.729
SHE74006.1
O-antigen biosynthesis protein WbqV.
  
 
 0.727
SHF52690.1
Tfp pilus assembly protein PilF.
  
 0.723
Your Current Organism:
Acidocella aminolytica
NCBI taxonomy Id: 1120923
Other names: A. aminolytica 101 = DSM 11237, Acidocella aminolytica 101, Acidocella aminolytica 101 = DSM 11237, Acidocella aminolytica DSM 11237, Acidocella aminolytica DSM 11237 = 101
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.