STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000381885_02867Unannotated protein. (338 aa)    
Predicted Functional Partners:
GCA_000381885_02869
Unannotated protein.
 
    0.949
GCA_000381885_02838
Unannotated protein.
  
  
 0.859
GCA_000381885_05629
Unannotated protein.
 
  
 0.837
GCA_000381885_05628
Unannotated protein.
  
  
 0.799
GCA_000381885_02868
Unannotated protein.
       0.787
GCA_000381885_02870
Unannotated protein.
 
    0.740
GCA_000381885_02866
Unannotated protein.
     
 0.669
GCA_000381885_01826
Unannotated protein.
  
  
 0.651
GCA_000381885_05040
Unannotated protein.
  
  
 0.555
GCA_000381885_03497
Unannotated protein.
  
    0.554
Your Current Organism:
Actinomadura atramentaria
NCBI taxonomy Id: 1120936
Other names: A. atramentaria DSM 43919, Actinomadura atramentaria DSM 43919, Actinomadura atramentaria SF2197
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.