STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000381885_04242Unannotated protein. (170 aa)    
Predicted Functional Partners:
GCA_000381885_05706
Unannotated protein.
  
 
 0.910
GCA_000381885_04515
Unannotated protein.
  
 
 0.813
GCA_000381885_04241
Unannotated protein.
       0.809
GCA_000381885_01310
Unannotated protein.
 
  
 0.806
GCA_000381885_05713
Unannotated protein.
    
  0.784
GCA_000381885_01311
Unannotated protein.
  
     0.770
GCA_000381885_03083
Unannotated protein.
  
 
 0.767
GCA_000381885_05168
Unannotated protein.
    
  0.761
GCA_000381885_01583
Unannotated protein.
    
 0.754
GCA_000381885_03471
Unannotated protein.
    
  0.752
Your Current Organism:
Actinomadura atramentaria
NCBI taxonomy Id: 1120936
Other names: A. atramentaria DSM 43919, Actinomadura atramentaria DSM 43919, Actinomadura atramentaria SF2197
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.