STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000425065_02359Unannotated protein. (200 aa)    
Predicted Functional Partners:
GCA_000425065_06086
Unannotated protein.
   
 0.803
GCA_000425065_02360
Unannotated protein.
       0.791
GCA_000425065_00495
Unannotated protein.
  
 
  0.605
GCA_000425065_01203
Unannotated protein.
  
 
  0.605
GCA_000425065_02358
Unannotated protein.
       0.603
GCA_000425065_00462
Unannotated protein.
  
 
 0.600
GCA_000425065_07569
Unannotated protein.
  
 
 0.590
GCA_000425065_02357
Unannotated protein.
       0.575
GCA_000425065_07298
Unannotated protein.
  
 
 0.574
GCA_000425065_06779
Unannotated protein.
  
 
 0.570
Your Current Organism:
Actinomadura rifamycini
NCBI taxonomy Id: 1120937
Other names: A. rifamycini DSM 43936, Actinomadura cremea subsp. rifamycini DSM 43936, Actinomadura rifamycini DSM 43936, Actinomadura rifamycini IFO 14183, Actinomadura rifamycini JCM 3309
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.