STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCZ39934.1Aspartate/methionine/tyrosine aminotransferase. (398 aa)    
Predicted Functional Partners:
SCZ39319.1
Glutamate synthase (NADPH/NADH) large chain.
    
 0.894
SCZ35016.1
L-proline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
   
 
 0.763
SCZ37487.1
Pyruvate dehydrogenase E1 component beta subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
   
 0.763
SCZ41777.1
Aspartate kinase; Belongs to the aspartokinase family.
  
 
 0.663
SCZ44874.1
GNAT-family acetyltransferase TIGR03103.
 
  
 0.655
SCZ19541.1
(2R)-3-sulfolactate dehydrogenase (NADP+); Belongs to the LDH2/MDH2 oxidoreductase family.
     
 0.632
SCZ39920.1
2-Methylisocitrate lyase, PEP mutase family.
  
 
  0.580
SCZ39916.1
Acetyltransferase (GNAT) domain-containing protein.
    
  0.557
vapC-4
Predicted nucleic acid-binding protein, contains PIN domain; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
       0.541
SCZ39930.1
Prevent-host-death family protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
       0.541
Your Current Organism:
Afifella marina
NCBI taxonomy Id: 1120955
Other names: A. marina DSM 2698, Afifella marina DSM 2698
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.