STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCZ42590.1Transcriptional regulator, TetR family. (209 aa)    
Predicted Functional Partners:
SCZ42598.1
N-carbamoyl-L-amino-acid hydrolase.
 
     0.681
SCZ42610.1
Dihydropyrimidinase.
 
     0.553
SCZ42638.1
NitT/TauT family transport system substrate-binding protein.
 
     0.553
SCZ42632.1
NitT/TauT family transport system permease protein.
 
     0.507
SCZ42627.1
NitT/TauT family transport system permease protein.
 
     0.504
SCZ42583.1
Uncaracterized surface protein containing fasciclin (FAS1) repeats.
       0.491
SCZ42615.1
NitT/TauT family transport system ATP-binding protein.
 
     0.480
SCZ42604.1
Hypothetical protein.
       0.423
SCZ42559.1
Dihydropyrimidine dehydrogenase (NAD+) subunit PreA.
  
     0.416
SCZ19975.1
Na+/proline symporter.
    
 
 0.407
Your Current Organism:
Afifella marina
NCBI taxonomy Id: 1120955
Other names: A. marina DSM 2698, Afifella marina DSM 2698
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.