STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCZ46834.1Rhs element Vgr protein. (286 aa)    
Predicted Functional Partners:
SCZ26573.1
Rhs element Vgr protein.
 
     0.976
SCZ26463.1
Type VI secretion system protein ImpK.
 
  
 0.969
SCZ26486.1
Type VI secretion system protein ImpH.
 
 
 0.929
SCZ26532.1
Type VI secretion system protein ImpB.
 
  
 0.928
SCZ26556.1
Type VI secretion system secreted protein Hcp.
 
  
 0.928
SCZ26449.1
Type VI secretion system protein ImpM.
 
  
 0.883
SCZ26541.1
Type VI secretion system protein ImpA.
 
  
 0.846
SCZ26498.1
Type VI secretion system protein ImpF.
 
  
 0.841
SCZ26512.1
Type VI secretion system protein ImpD.
 
  
 0.834
SCZ26522.1
Type VI secretion system protein ImpC.
 
  
 0.834
Your Current Organism:
Afifella marina
NCBI taxonomy Id: 1120955
Other names: A. marina DSM 2698, Afifella marina DSM 2698
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.