Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
D8Y24_04495 | D8Y24_10575 | GCA_000425105_02428 | GCA_000425105_01539 | Unannotated protein. | Unannotated protein. | 0.890 |
D8Y24_04495 | D8Y24_13120 | GCA_000425105_02428 | GCA_000425105_01171 | Unannotated protein. | Unannotated protein; Belongs to the DEAD box helicase family. | 0.789 |
D8Y24_04495 | fusA | GCA_000425105_02428 | GCA_000425105_01951 | Unannotated protein. | Unannotated protein; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily. | 0.837 |
D8Y24_04495 | rplC | GCA_000425105_02428 | GCA_000425105_01970 | Unannotated protein. | Unannotated protein; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.783 |
D8Y24_04495 | rplD | GCA_000425105_02428 | GCA_000425105_01971 | Unannotated protein. | Unannotated protein; Forms part of the polypeptide exit tunnel. | 0.489 |
D8Y24_04495 | rplM | GCA_000425105_02428 | GCA_000425105_02018 | Unannotated protein. | Unannotated protein; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.801 |
D8Y24_04495 | rplX | GCA_000425105_02428 | GCA_000425105_01981 | Unannotated protein. | Unannotated protein; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | 0.808 |
D8Y24_07185 | D8Y24_13120 | GCA_000425105_02518 | GCA_000425105_01171 | Unannotated protein. | Unannotated protein; Belongs to the DEAD box helicase family. | 0.796 |
D8Y24_07185 | pnp | GCA_000425105_02518 | GCA_000425105_01786 | Unannotated protein. | Unannotated protein; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.986 |
D8Y24_10575 | D8Y24_04495 | GCA_000425105_01539 | GCA_000425105_02428 | Unannotated protein. | Unannotated protein. | 0.890 |
D8Y24_10575 | D8Y24_10915 | GCA_000425105_01539 | GCA_000425105_00510 | Unannotated protein. | Unannotated protein; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | 0.890 |
D8Y24_10575 | D8Y24_13120 | GCA_000425105_01539 | GCA_000425105_01171 | Unannotated protein. | Unannotated protein; Belongs to the DEAD box helicase family. | 0.872 |
D8Y24_10575 | fusA | GCA_000425105_01539 | GCA_000425105_01951 | Unannotated protein. | Unannotated protein; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily. | 0.838 |
D8Y24_10575 | rplD | GCA_000425105_01539 | GCA_000425105_01971 | Unannotated protein. | Unannotated protein; Forms part of the polypeptide exit tunnel. | 0.775 |
D8Y24_10915 | D8Y24_10575 | GCA_000425105_00510 | GCA_000425105_01539 | Unannotated protein; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | Unannotated protein. | 0.890 |
D8Y24_10915 | D8Y24_13120 | GCA_000425105_00510 | GCA_000425105_01171 | Unannotated protein; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | Unannotated protein; Belongs to the DEAD box helicase family. | 0.835 |
D8Y24_10915 | fusA | GCA_000425105_00510 | GCA_000425105_01951 | Unannotated protein; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | Unannotated protein; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily. | 0.849 |
D8Y24_10915 | rplC | GCA_000425105_00510 | GCA_000425105_01970 | Unannotated protein; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | Unannotated protein; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.783 |
D8Y24_10915 | rplD | GCA_000425105_00510 | GCA_000425105_01971 | Unannotated protein; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | Unannotated protein; Forms part of the polypeptide exit tunnel. | 0.497 |
D8Y24_10915 | rplM | GCA_000425105_00510 | GCA_000425105_02018 | Unannotated protein; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | Unannotated protein; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.801 |
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