Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHE28014.1 | SHE28123.1 | SAMN02746064_00125 | SAMN02746064_00133 | D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6); Belongs to the peptidase S11 family. | Penicillin-binding protein 1A. | 0.751 |
SHE28014.1 | SHE55886.1 | SAMN02746064_00125 | SAMN02746064_00765 | D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6); Belongs to the peptidase S11 family. | Stage V sporulation protein D (sporulation-specific penicillin-binding protein). | 0.892 |
SHE28014.1 | SHE91010.1 | SAMN02746064_00125 | SAMN02746064_01466 | D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6); Belongs to the peptidase S11 family. | Penicillin-binding protein 1A. | 0.795 |
SHE28014.1 | SHE98561.1 | SAMN02746064_00125 | SAMN02746064_01630 | D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6); Belongs to the peptidase S11 family. | D-alanyl-D-alanine carboxypeptidase. | 0.715 |
SHE28123.1 | SHE28014.1 | SAMN02746064_00133 | SAMN02746064_00125 | Penicillin-binding protein 1A. | D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6); Belongs to the peptidase S11 family. | 0.751 |
SHE28123.1 | SHE29820.1 | SAMN02746064_00133 | SAMN02746064_00205 | Penicillin-binding protein 1A. | Peptidoglycan glycosyltransferase. | 0.638 |
SHE28123.1 | SHE55886.1 | SAMN02746064_00133 | SAMN02746064_00765 | Penicillin-binding protein 1A. | Stage V sporulation protein D (sporulation-specific penicillin-binding protein). | 0.962 |
SHE28123.1 | SHE56053.1 | SAMN02746064_00133 | SAMN02746064_00770 | Penicillin-binding protein 1A. | Cell division protein FtsW; Belongs to the SEDS family. | 0.673 |
SHE28123.1 | SHE67610.1 | SAMN02746064_00133 | SAMN02746064_00973 | Penicillin-binding protein 1A. | Penicillin-binding protein 2. | 0.772 |
SHE28123.1 | SHE87226.1 | SAMN02746064_00133 | SAMN02746064_01387 | Penicillin-binding protein 1A. | Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB. | 0.674 |
SHE28123.1 | SHE90682.1 | SAMN02746064_00133 | SAMN02746064_01458 | Penicillin-binding protein 1A. | D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6); Belongs to the peptidase S11 family. | 0.680 |
SHE28123.1 | SHE91010.1 | SAMN02746064_00133 | SAMN02746064_01466 | Penicillin-binding protein 1A. | Penicillin-binding protein 1A. | 0.762 |
SHE28123.1 | SHE98561.1 | SAMN02746064_00133 | SAMN02746064_01630 | Penicillin-binding protein 1A. | D-alanyl-D-alanine carboxypeptidase. | 0.707 |
SHE28123.1 | murC | SAMN02746064_00133 | SAMN02746064_01731 | Penicillin-binding protein 1A. | UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family. | 0.682 |
SHE29820.1 | SHE28123.1 | SAMN02746064_00205 | SAMN02746064_00133 | Peptidoglycan glycosyltransferase. | Penicillin-binding protein 1A. | 0.638 |
SHE29820.1 | SHE55886.1 | SAMN02746064_00205 | SAMN02746064_00765 | Peptidoglycan glycosyltransferase. | Stage V sporulation protein D (sporulation-specific penicillin-binding protein). | 0.766 |
SHE29820.1 | SHE56053.1 | SAMN02746064_00205 | SAMN02746064_00770 | Peptidoglycan glycosyltransferase. | Cell division protein FtsW; Belongs to the SEDS family. | 0.983 |
SHE29820.1 | SHE67610.1 | SAMN02746064_00205 | SAMN02746064_00973 | Peptidoglycan glycosyltransferase. | Penicillin-binding protein 2. | 0.775 |
SHE29820.1 | SHE90682.1 | SAMN02746064_00205 | SAMN02746064_01458 | Peptidoglycan glycosyltransferase. | D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6); Belongs to the peptidase S11 family. | 0.403 |
SHE29820.1 | SHE91010.1 | SAMN02746064_00205 | SAMN02746064_01466 | Peptidoglycan glycosyltransferase. | Penicillin-binding protein 1A. | 0.595 |
page 1 of 4