STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHE28123.1Penicillin-binding protein 1A. (1022 aa)    
Predicted Functional Partners:
SHE55886.1
Stage V sporulation protein D (sporulation-specific penicillin-binding protein).
 
 0.962
SHE67610.1
Penicillin-binding protein 2.
 
 
 0.772
SHE91010.1
Penicillin-binding protein 1A.
  
  
 
0.762
SHE28014.1
D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6); Belongs to the peptidase S11 family.
  
 
 0.751
SHE98561.1
D-alanyl-D-alanine carboxypeptidase.
     
 0.707
murC
UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family.
 
   
 0.682
SHE90682.1
D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6); Belongs to the peptidase S11 family.
  
 
 0.680
SHE87226.1
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB.
  
   
 0.674
SHE56053.1
Cell division protein FtsW; Belongs to the SEDS family.
  
 
 
 0.673
SHE29820.1
Peptidoglycan glycosyltransferase.
 
0.638
Your Current Organism:
Alkalibacter saccharofermentans
NCBI taxonomy Id: 1120975
Other names: A. saccharofermentans DSM 14828, Alkalibacter saccharofermentans DSM 14828
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