STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHE32073.1ABC-type nitrate/sulfonate/bicarbonate transport system, permease component. (255 aa)    
Predicted Functional Partners:
SHE32041.1
ABC-type nitrate/sulfonate/bicarbonate transport system, substrate-binding protein.
 
 0.997
SHE32003.1
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component.
 
 0.985
SHE32105.1
Uncharacterized protein, MTH1187 family.
 
    0.943
SHF14658.1
Sulfonate transport system ATP-binding protein.
 
 0.900
SHF14696.1
Sulfonate transport system substrate-binding protein.
 
 
 0.900
SHE43854.1
NitT/TauT family transport system ATP-binding protein.
 
 0.796
SHE32138.1
TatD DNase family protein.
       0.779
SHF10512.1
NitT/TauT family transport system substrate-binding protein.
 
 
 0.774
SHF10215.1
NitT/TauT family transport system ATP-binding protein.
 
 0.773
SHE43774.1
NitT/TauT family transport system substrate-binding protein.
  
 
 0.664
Your Current Organism:
Alkalibacter saccharofermentans
NCBI taxonomy Id: 1120975
Other names: A. saccharofermentans DSM 14828, Alkalibacter saccharofermentans DSM 14828
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.