STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHE40628.13-oxoacyl-[acyl-carrier protein] reductase. (249 aa)    
Predicted Functional Partners:
SHF20739.1
Amino acid adenylation domain-containing protein.
 
 0.925
SHE38877.1
Formate dehydrogenase major subunit.
   
 0.870
SHF09889.1
Glutamate synthase (ferredoxin).
     
 0.865
SHE38973.1
PTS system, glucose-specific IIC component.
     
 0.835
SHE95588.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
 0.835
accA
acetyl-CoA carboxylase carboxyl transferase subunit alpha; Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA.
  
 
 0.789
SHE40404.1
Ribose 5-phosphate isomerase B.
  
 0.784
SHE97744.1
Acetaldehyde dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
 0.757
SHE72913.1
Pyruvate kinase; Belongs to the pyruvate kinase family.
   
 0.741
SHE73552.1
[Acyl-carrier-protein] S-malonyltransferase.
 0.727
Your Current Organism:
Alkalibacter saccharofermentans
NCBI taxonomy Id: 1120975
Other names: A. saccharofermentans DSM 14828, Alkalibacter saccharofermentans DSM 14828
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